Release Notes

Release 0.2.3

Bug fixes

  • Fixed bug in –version handling of installed versions (#113)

  • Fixed breaking syntax error in stage 2 (#115)

Other changes

  • Housekeeping (#114)

Release 0.2.2

Bug fixes

  • Fixed –version argument of cobrawap command (#95)

  • Fixed path handling issues (#92), (#101)

Other changes

  • Fixed path issue in automated documentation builds (#102)

  • Fixed Python 3.12 compatibility (#105)

  • Improved figure outputs (#98)

  • Added –force-overwrite flag (#110)

  • Various maintenance fixes (#86), (#89), (#90), (#93), (#97), (#102), (#107), (#108)

Release 0.2.1

Other changes

  • Improved internal handling of pathnames (#79)

  • Maintenance fixes, including dependency adjustments (#80), (#83)

Release 0.2.0

New functionality and features

  • Ability to plot complete signal ranges using TSTART and TSTOP set to None (#48)

  • New default value None for MAXIMA_THRESHOLD_WINDOW to indicate that the complete signal duration is considered (#49)

  • Added additional keyword arguments to cobrawap command (#76)

Bug fixes

  • Fixed bug related to updating of AnalogSignal names (#67)

  • Fixed issue where roi_selection and spatial_derivative incorrectly handled boolean arguments (#65)

  • Fixed issue related to directly specifying a stage from the cobrawap interface (#70)

  • Fixed issue with cyclic boundary conditions during phase convolution (#66)

Documentation

  • Updated README information (#59), (#74), (#77)

Other changes

  • Automated package distribution to PyPI (#62)

Release 0.1.1

Documentation

  • Added help statement for CLI client

Bug fixes

  • Fixed install by disallowing Snakemake versions >=8.0.0, which are missing subworkflow support

Selected dependency changes

  • snakemake >= 7.10.0, < 8.0.0

Release 0.1.0

Initial release of Cobrawap accompanying the manuscript

Gutzen, R., De Bonis, G., De Luca, C., Pastorelli, E., Capone, C., Allegra Mascaro, A. L., Resta, F., Manasanch, A., Pavone, F. S., Sanchez-Vives, M. V., Mattia, M., Grün, S., Paolucci, P. S., & Denker, M. (2022). A modular and adaptable analysis pipeline to compare slow cerebral rhythms across heterogeneous datasets. Cell Reports Methods 4, 100681. https://doi.org/10.1016/j.crmeth.2023.100681